Re: [las_users] LAS 8.6.3

Is there a newer version of Ferret v7.2 available? I continue to get the following error when I select Show Values in LAS on the datasets that return an empty box. This occurs on my development server running LAS 8.6.3, Ferret 7.2, Thredds 4.6.10, and Tomcat 8.5.23. If data is returned for the Show Values, this error does not occur.

This appears to be Ferret related but would installation of LAS 8.6.4 solve this?

Penny Oots

[xxxxxx@yyyyyyyy local]$ *** Error in `/usr/local/ferret/bin/ferret': free(): invalid next size (fast): 0x000000000ae35eb0 ***

======= Backtrace: =========

/lib64/libc.so.6(+0x7c503)[0x7f75a23e6503]

/usr/local/ferret/bin/ferret(free_dyn_mem_+0x9)[0x780a85]

/usr/local/ferret/bin/ferret(free_mr_dynmem_+0x41)[0x74de85]

/usr/local/ferret/bin/ferret(delete_variable_+0x1f7)[0x74cc87]

/usr/local/ferret/bin/ferret(delete_mrs_in_progress_+0x47)[0x74c077]

/usr/local/ferret/bin/ferret(eval_expr_+0x85)[0x69840d]

/usr/local/ferret/bin/ferret(repl_exprns_+0x4786)[0x61a436]

/usr/local/ferret/bin/ferret(parse_command_+0x22df)[0x61352f]

/usr/local/ferret/bin/ferret(get_fer_command_+0x10ca)[0x5f5ba6]

/usr/local/ferret/bin/ferret(ferret_dispatch_+0xc4)[0x46fe0b]

/usr/local/ferret/bin/ferret(ferret_dispatch_c+0x2e)[0x65fd86]

/usr/local/ferret/bin/ferret[0x46ef4c]

/usr/local/ferret/bin/ferret(main+0x623)[0x46f5f1]

/lib64/libc.so.6(__libc_start_main+0xf5)[0x7f75a238bb35]

/usr/local/ferret/bin/ferret[0x46ec39]

======= Memory map: ========

00400000-00cfd000 r-xp 00000000 fd:02 413715276 /usr/local/ferret-7.2/bin/ferret_v7.2

00efd000-0587a000 rw-p 008fd000 fd:02 413715276 /usr/local/ferret-7.2/bin/ferret_v7.2

0587a000-09825000 rw-p 00000000 00:00 0

0aa43000-0af0f000 rw-p 00000000 00:00 0 [heap]

7f7598000000-7f7598021000 rw-p 00000000 00:00 0

7f7598021000-7f759c000000 ---p 00000000 00:00 0

7f759c38e000-7f759c3a3000 r-xp 00000000 fd:02 664994289 /usr/lib64/libgcc_s-4.8.5-20150702.so.1

7f759c3a3000-7f759c5a2000 ---p 00015000 fd:02 664994289 /usr/lib64/libgcc_s-4.8.5-20150702.so.1

7f759c5a2000-7f759c5a3000 r--p 00014000 fd:02 664994289 /usr/lib64/libgcc_s-4.8.5-20150702.so.1

7f759c5a3000-7f759c5a4000 rw-p 00015000 fd:02 664994289 /usr/lib64/libgcc_s-4.8.5-20150702.so.1

7f759c5a4000-7f759c5c4000 r-xp 00000000 fd:02 536878313 /usr/lib64/libnssdbm3.so

7f759c5c4000-7f759c7c4000 ---p 00020000 fd:02 536878313 /usr/lib64/libnssdbm3.so

7f759c7c4000-7f759c7c5000 r--p 00020000 fd:02 536878313 /usr/lib64/libnssdbm3.so

7f759c7c5000-7f759c7c6000 rw-p 00021000 fd:02 536878313 /usr/lib64/libnssdbm3.so

7f759c7c6000-7f759c7e3000 r-xp 00000000 fd:02 539384568 /usr/lib64/libnsspem.so

7f759c7e3000-7f759c9e3000 ---p 0001d000 fd:02 539384568 /usr/lib64/libnsspem.so

7f759c9e3000-7f759c9e4000 r--p 0001d000 fd:02 539384568 /usr/lib64/libnsspem.so

7f759c9e4000-7f759c9e5000 rw-p 0001e000 fd:02 539384568 /usr/lib64/libnsspem.so

7f759c9e5000-7f759c9e7000 r-xp 00000000 fd:02 537418921 /usr/lib64/libnsssysinit.so

7f759c9e7000-7f759cbe6000 ---p 00002000 fd:02 537418921 /usr/lib64/libnsssysinit.so

7f759cbe6000-7f759cbe7000 r--p 00001000 fd:02 537418921 /usr/lib64/libnsssysinit.so

7f759cbe7000-7f759cbe8000 rw-p 00002000 fd:02 537418921 /usr/lib64/libnsssysinit.so

7f759cbe8000-7f759cc61000 r-xp 00000000 fd:02 536871851 /usr/lib64/libfreeblpriv3.so

7f759cc61000-7f759ce60000 ---p 00079000 fd:02 536871851 /usr/lib64/libfreeblpriv3.so

7f759ce60000-7f759ce62000 r--p 00078000 fd:02 536871851 /usr/lib64/libfreeblpriv3.so

7f759ce62000-7f759ce63000 rw-p 0007a000 fd:02 536871851 /usr/lib64/libfreeblpriv3.so

7f759ce63000-7f759ce67000 rw-p 00000000 00:00 0

7f759ce67000-7f759cf18000 r-xp 00000000 fd:02 536878225 /usr/lib64/libsqlite3.so.0.8.6

7f759cf18000-7f759d117000 ---p 000b1000 fd:02 536878225 /usr/lib64/libsqlite3.so.0.8.6

7f759d117000-7f759d119000 r--p 000b0000 fd:02 536878225 /usr/lib64/libsqlite3.so.0.8.6

7f759d119000-7f759d11c000 rw-p 000b2000 fd:02 536878225 /usr/lib64/libsqlite3.so.0.8.6

7f759d11c000-7f759d158000 r-xp 00000000 fd:02 536878315 /usr/lib64/libsoftokn3.so

7f759d158000-7f759d358000 ---p 0003c000 fd:02 536878315 /usr/lib64/libsoftokn3.so

7f759d358000-7f759d359000 r--p 0003c000 fd:02 536878315 /usr/lib64/libsoftokn3.so

7f759d359000-7f759d35a000 rw-p 0003d000 fd:02 536878315 /usr/lib64/libsoftokn3.so

7f759d35a000-7f759d366000 r-xp 00000000 fd:02 536877822 /usr/lib64/libnss_files-2.17.so

7f759d366000-7f759d565000 ---p 0000c000 fd:02 536877822 /usr/lib64/libnss_files-2.17.so

7f759d565000-7f759d566000 r--p 0000b000 fd:02 536877822 /usr/lib64/libnss_files-2.17.so

7f759d566000-7f759d567000 rw-p 0000c000 fd:02 536877822 /usr/lib64/libnss_files-2.17.so

7f759d567000-7f759d56d000 rw-p 00000000 00:00 0

7f759d56d000-7f759d56e000 ---p 00000000 00:00 0

7f759d56e000-7f759df57000 rw-p 00000000 00:00 0

7f759df57000-7f759df59000 r-xp 00000000 fd:02 536871849 /usr/lib64/libfreebl3.so

7f759df59000-7f759e158000 ---p 00002000 fd:02 536871849 /usr/lib64/libfreebl3.so

7f759e158000-7f759e159000 r--p 00001000 fd:02 536871849 /usr/lib64/libfreebl3.so

7f759e159000-7f759e15a000 rw-p 00002000 fd:02 536871849 /usr/lib64/libfreebl3.so

7f759e15a000-7f759e1ba000 r-xp 00000000 fd:02 536877955 /usr/lib64/libpcre.so.1.2.0

7f759e1ba000-7f759e3b9000 ---p 00060000 fd:02 536877955 /usr/lib64/libpcre.so.1.2.0

7f759e3b9000-7f759e3ba000 r--p 0005f000 fd:02 536877955 /usr/lib64/libpcre.so.1.2.0

7f759e3ba000-7f759e3bb000 rw-p 00060000 fd:02 536877955 /usr/lib64/libpcre.so.1.2.0

7f759e3bb000-7f759e3c3000 r-xp 00000000 fd:02 536877456 /usr/lib64/libcrypt-2.17.so

7f759e3c3000-7f759e5c2000 ---p 00008000 fd:02 536877456 /usr/lib64/libcrypt-2.17.so

7f759e5c2000-7f759e5c3000 r--p 00007000 fd:02 536877456 /usr/lib64/libcrypt-2.17.so

7f759e5c3000-7f759e5c4000 rw-p 00008000 fd:02 536877456 /usr/lib64/libcrypt-2.17.so

7f759e5c4000-7f759e5f2000 rw-p 00000000 00:00 0

7f759e5f2000-7f759e616000 r-xp 00000000 fd:02 540617640 /usr/lib64/libselinux.so.1

7f759e616000-7f759e815000 ---p 00024000 fd:02 540617640 /usr/lib64/libselinux.so.1

7f759e815000-7f759e816000 r--p 00023000 fd:02 540617640 /usr/lib64/libselinux.so.1

7f759e816000-7f759e817000 rw-p 00024000 fd:02 540617640 /usr/lib64/libselinux.so.1

7f759e817000-7f759e819000 rw-p 00000000 00:00 0

7f759e819000-7f759e835000 r-xp 00000000 fd:02 536878371 /usr/lib64/libsasl2.so.3.0.0

7f759e835000-7f759ea34000 ---p 0001c000 fd:02 536878371 /usr/lib64/libsasl2.so.3.0.0

From: "Ansley C. Manke" <ansley.b.manke@xxxxxxxx>
Date: Wednesday, September 13, 2017 at 11:47 AM
To: Roland Schweitzer - NOAA Affiliate <roland.schweitzer@xxxxxxxx>, "Oots, Penny C. (LARC-E301)[SCIENCE SYSTEMS AND APPLICATIONS, INC]" <penny.c.oots@xxxxxxxx>
Cc: "las_users@xxxxxxxx" <las_users@xxxxxxxx>
Subject: Re: [las_users] LAS 8.6.3

Hi Penny,

The issuehere is that in the installation script for Ferret, there are a number of environment variables set, and we made a change with the Ferret v7.2 release which stopped defining one of those, PLOTFONTS, instead defining something called FER_FONTS. The LAS configure.pl had been looking only for PLOTFONTS.

This has been resolved with LAS 8.6.3, so you can use Ferret v7.2. I have removed that note from the LAS prerequisites page.

Ansley

On 9/13/2017 7:32 AM, Roland Schweitzer - NOAA Affiliate wrote:

I'm using Ferret 7.2 and we generally recommend the latest version. Sorry that the documentation tends to lag behind

Not sure what you mean by 7.2 being incompatible with the configure script.

Roalnd

On Wed, Sep 13, 2017 at 9:01 AM, Oots, Penny C. (LARC-E3)[Science Systems & Applications, Inc.] <penny.c.oots@xxxxxxxx> wrote:

What versions of Ferret and Thredds are you recommending for LAS v8.6.3? I only see Ferret 7.2 on the Ferret download page but saw this on the LAS prerequisites page:

Ferret 6.95 or higher with the etopo05.nc data set and the Ferret environment that goes with the release. (do not use Ferret v7.2, which has an incompatibility with LAS configure script.)

Penny Oots

From: <owner-las_users@xxxxxxxx> on behalf of Roland Schweitzer - NOAA Affiliate <roland.schweitzer@xxxxxxxx>
Date: Friday, September 8, 2017 at 5:31 PM
To: "las_users@xxxxxxxx" <las_users@xxxxxxxx>
Subject: [las_users] LAS 8.6.3

All,

Apache has released a new version of Struts 2. LAS was not (as far as I can tell) affected by any vulnerabilities discovered between 2.5.12 and 2.5.13, but to keep in step with Struts 2 and to avoid any issues if security teams would like to have applications at the latest version, I have made a new release of LAS which upgrades to Struts 2.5.13.

ftp://ftp.pmel.noaa.gov/pub/las/las.v8.6.3.tar.gz or https://github.com/NOAA-PMEL/LAS/releases/tag/v8.6.3

Roland

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The policy of the DOC and NOAA requires me to inform you that the opinions in this email are mine and do not necessarily represent the opinion or policy of the Department of Commerce or the National Oceanic and Atmospheric Administration.

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The policy of the DOC and NOAA requires me to inform you that the opinions in this email are mine and do not necessarily represent the opinion or policy of the Department of Commerce or the National Oceanic and Atmospheric Administration.