[las_users] Another two questions about Java addXML.sh

[Roger Olivella <olivella@xxxxxxxxxxxxx>]

Hi all,

1)
------------------------------
I've installed LAS version 6.5.1.2 under Linux Fedora 3. I'm trying to 
add about 1,000 NetCDF using Java /usr/local/las/xml/java/addXML/addXML.sh:

prompt>./addXML.sh -n netcdf1 -n netcdf2 -n netcdf3 ... -n netcdf1000 
-d:"Medatlas" medatlas

While executing this command, I always get the following error:

IO error = java.io.FileNotFoundException: 
/home/foo/ferret_datasets/data/foo.nc (Too many open files)
Exception in thread "main" java.lang.NullPointerException
       at gov.noaa.pmel.tmap.addxml.addXML.main(Unknown Source)


What I'm doing wrong? Is not possible to add a large number of NetCDF at 
the same time?
------------------------------


2)
------------------------------
I've tried also to add a related subset (4 NetCDF files) of these 1,000 
NetCDF and addXML.sh works OK. The problem is that when I select the 
dataset on the web interface, LAS shows 4 different variables in spite 
of the fact that is the same variable:

Dataset variable(s): 
[] Phosphate
[] Phosphate
[] Phosphate
[] Phosphate

Next >

Instead of this I excpected something like:

Dataset variable(s): 
[] Phosphate

Next >


The resulting XML after running addXML.sh on this subset of NetCDF was:

<datasets>
 <id-bfd8a05884 name="MedAtlas (phosphate)">
   <variables>
     <phos-id-bfd8a05884 name="Phosphate" units="millimol/m3" 
url="/home/foo/ferret_datasets/data/spring.sicily.phos.nc.new.nc#phos">
       <link match="/lasdata/grids/grid-lon-lat-depth-id-bfd8a05884" />
     </phos-id-bfd8a05884>
     <phos-id-decbc11f36 name="Phosphate" units="millimol/m3" 
url="/home/foo/ferret_datasets/data/spring.sicily.phos.error.nc.new.nc#phos">
       <link match="/lasdata/grids/grid-lon-lat-depth-id-decbc11f36" />
     </phos-id-decbc11f36>
     <phos-id-28bcdb5249 name="Phosphate" units="millimol/m3" 
url="/home/foo/ferret_datasets/data/summer.aegean.phos.error.nc.new.nc#phos">
       <link match="/lasdata/grids/grid-lon-lat-depth-id-28bcdb5249" />
     </phos-id-28bcdb5249>
     <phos-id-1a68daba16 name="Phosphate" units="millimol/m3" 
url="/home/foo/ferret_datasets/data/summer.aegean.phos.nc.new.nc#phos">
       <link match="/lasdata/grids/grid-lon-lat-depth-id-1a68daba16" />
     </phos-id-1a68daba16>
   </variables>
 </id-bfd8a05884>
</datasets>
<grids>
 <grid-lon-lat-depth-id-bfd8a05884>
   <link match="/lasdata/axes/lon-x-id-bfd8a05884" />
   <link match="/lasdata/axes/lat-y-id-bfd8a05884" />
   <link match="/lasdata/axes/depth-z-id-bfd8a05884" />
 </grid-lon-lat-depth-id-bfd8a05884>
 <grid-lon-lat-depth-id-decbc11f36>
   <link match="/lasdata/axes/lon-x-id-decbc11f36" />
   <link match="/lasdata/axes/lat-y-id-decbc11f36" />
   <link match="/lasdata/axes/depth-z-id-decbc11f36" />
 </grid-lon-lat-depth-id-decbc11f36>
 <grid-lon-lat-depth-id-28bcdb5249>
   <link match="/lasdata/axes/lon-x-id-28bcdb5249" />
   <link match="/lasdata/axes/lat-y-id-28bcdb5249" />
   <link match="/lasdata/axes/depth-z-id-28bcdb5249" />
 </grid-lon-lat-depth-id-28bcdb5249>
 <grid-lon-lat-depth-id-1a68daba16>
   <link match="/lasdata/axes/lon-x-id-1a68daba16" />
   <link match="/lasdata/axes/lat-y-id-1a68daba16" />
   <link match="/lasdata/axes/depth-z-id-1a68daba16" /> <link 
match="/lasdata/axes/lat-y-id-1a68daba16" />
   <link match="/lasdata/axes/depth-z-id-1a68daba16" />
 </grid-lon-lat-depth-id-1a68daba16>
</grids>
<axes>
...
</axes>


How can I add these NetCDF under the same variable "Phosphate"?
------------------------------



Thanks in advance,

Roger Olivella