[ferret_users] Building pyferret for Suse Linux 11 failed

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Subject: [ferret_users] Building pyferret for Suse Linux 11 failed
From: Martin Schmidt <martin.schmidt@xxxxxxxxxxxxxxxxx>
Date: Thu, 10 Apr 2014 12:21:13 +0200
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Good morning,

I am trying to build pyferret (latest release) for Linux Suse 11. Morerecentsystem versions would be compatible with the UBUNTU binary, but themachine isis a CRAY and I have no influence on the system version. So I have tomake the best from what

I have got.

The compiler is gcc/gfortran 4.81., phython is version 2.7.6, 3.3.3 isalso available.

I choose the compiler and python version loading modules. (This is notthe tricky CRAY programming environment.)


After adjusting site_specific.mk to find JAVA, netcdf ....
BUILDTYPE    = x86_64-linux
PYTHON_EXE    = python2.7

I try make. This runs almost through (great) but finally I end up withthe error message:

/usr/bin/gcc -shared -L /usr/lib64 -lm -ldl -lpthread -lutil-I/sw/tools/python/2.7.6/generic/include/python2.7-I/sw/viz/ferret/py_ferret_102_py_27/pyferret-1.0.2-source/fer/common-I/sw/viz/ferret/py_ferret_102_py_27/pyferret-1.0.2-source/fer/grdel-I/sw/viz/ferret/py_ferret_102_py_27/pyferret-1.0.2-source/fer/cferbind-I/sw/viz/ferret/py_ferret_102_py_27/pyferret-1.0.2-source/fmt/cmn-I/sw/viz/ferret/py_ferret_102_py_27/pyferret-1.0.2-source/ppl/include-I/sw/viz/ferret/py_ferret_102_py_27/pyferret-1.0.2-source/ppl/tmap_inc-I/sw/viz/ferret/py_ferret_102_py_27/pyferret-1.0.2-source/pyfermod-I/sw/viz/ferret/py_ferret_102_py_27/pyferret-1.0.2-source/external_functions/ef_utility-I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0-I/usr/lib64/glib-2.0/include-I/sw/dataformats/netcdf/4.3.0/smp1/gnu/include -Dcrptd_cat_argument-Ddouble_p -Dgfortran -Dreclen_in_bytes -Dunix -Dxgks -DG77_SIGNAL -DG77-DINTERNAL_READ_FORMAT_BUG -DLINUX -DMANDATORY_FORMAT_WIDTHS -DNEED_IAND-DNO_DOUBLE_ESCAPE_SLASH -DNO_OPEN_CARRIAGECONTROL -DNO_OPEN_READONLY-DNO_OPEN_RECORDTYPE -DNO_OPEN_SHARED -DNO_PASSED_CONCAT-DNO_PREPEND_STRING -DSTAR_1_SUPPORTED -DVOID_SIGHANDLER -DX_REFRESH-DXT_CODE -m64 -fPIC -Dlint -D_SSIZE_T -D_POSIX_VERSION -Dsun4 -Obuild/temp.linux-x86_64-2.7/pyfermod/pyefcn_custom_axes.obuild/temp.linux-x86_64-2.7/pyfermod/pyefcn_get_error.obuild/temp.linux-x86_64-2.7/pyfermod/copy_pystat_data.obuild/temp.linux-x86_64-2.7/pyfermod/pyefcn_init.obuild/temp.linux-x86_64-2.7/pyfermod/libpyferret.obuild/temp.linux-x86_64-2.7/pyfermod/decref_pyobj.obuild/temp.linux-x86_64-2.7/pyfermod/pyefcn_compute.obuild/temp.linux-x86_64-2.7/pyfermod/pyefcn_result_limits.obuild/temp.linux-x86_64-2.7/pyfermod/set_memory.ofer/ef_utility/ef_get_arg_type.o fer/ef_utility/ef_get_bad_flags.ofer/ef_utility/ef_get_cx_list.o fer/ef_utility/ef_get_mres.ofer/ef_utility/ef_get_mr_list.o fer/ef_utility/ef_get_one_val.ofer/ef_utility/ef_get_result_type.o fer/ef_utility/ef_put_string.ofer/ef_utility/ef_put_string_ptr.ofer/ef_utility/ef_set_alt_fcn_name_sub.ofer/ef_utility/ef_set_arg_desc_sub.ofer/ef_utility/ef_set_arg_name_sub.o fer/ef_utility/ef_set_arg_type.ofer/ef_utility/ef_set_arg_unit_sub.o fer/ef_utility/ef_set_axis_extend.ofer/ef_utility/ef_set_axis_influence.ofer/ef_utility/ef_set_axis_influence_6d.ofer/ef_utility/ef_set_axis_inheritance.ofer/ef_utility/ef_set_axis_inheritance_6d.ofer/ef_utility/ef_set_axis_limits.ofer/ef_utility/ef_set_axis_reduction.ofer/ef_utility/ef_set_axis_reduction_6d.ofer/ef_utility/ef_set_custom_axis_sub.o fer/ef_utility/ef_set_desc_sub.ofer/ef_utility/ef_set_freq_axis_sub.ofer/ef_utility/ef_set_has_vari_args.o fer/ef_utility/ef_set_num_args.ofer/ef_utility/ef_set_num_work_arrays.ofer/ef_utility/ef_set_piecemeal_ok.ofer/ef_utility/ef_set_piecemeal_ok_6d.ofer/ef_utility/ef_set_result_type.ofer/ef_utility/ef_set_work_array_dims.ofer/ef_utility/ef_set_work_array_dims_6d.ofer/ef_utility/ef_set_work_array_lens.ofer/ef_utility/ef_set_work_array_lens_6d.ofer/ef_utility/ef_version_test.o fer/ef_utility/ef_bail_out.ofer/ef_utility/ef_get_arg_info.ofer/ef_utility/ef_get_arg_mem_subscripts.ofer/ef_utility/ef_get_arg_mem_subscripts_6d.ofer/ef_utility/ef_get_arg_string.ofer/ef_utility/ef_get_arg_subscripts.ofer/ef_utility/ef_get_arg_subscripts_6d.ofer/ef_utility/ef_get_arg_ss_extremes.ofer/ef_utility/ef_get_arg_ss_extremes_6d.ofer/ef_utility/ef_get_axis_calendar.o fer/ef_utility/ef_get_axis_dates.ofer/ef_utility/ef_get_axis_info.o fer/ef_utility/ef_get_axis_info_6d.ofer/ef_utility/ef_get_axis_modulo_len.ofer/ef_utility/ef_get_box_hi_lim.o fer/ef_utility/ef_get_box_limits.ofer/ef_utility/ef_get_box_lo_lim.o fer/ef_utility/ef_get_box_size.ofer/ef_utility/ef_get_coordinates.ofer/ef_utility/ef_get_one_arg_string.ofer/ef_utility/ef_get_one_val_sub.ofer/ef_utility/ef_get_one_val_sub_sub.ofer/ef_utility/ef_get_res_mem_subscripts.ofer/ef_utility/ef_get_res_mem_subscripts_6d.ofer/ef_utility/ef_get_res_subscripts.ofer/ef_utility/ef_get_res_subscripts_6d.ofer/ef_utility/ef_get_string_arg_element.ofer/ef_utility/ef_get_string_arg_element_6d.ofer/ef_utility/ef_get_string_arg_element_len.ofer/ef_utility/ef_get_string_arg_element_len_6d.ofer/ef_utility/ef_get_string_arg_elem_len_sub.ofer/ef_utility/ef_get_string_arg_element_sub.ofer/ef_utility/ef_get_string_arg_max_len.ofer/ef_utility/ef_get_wrk_mem_subscripts.ofer/ef_utility/ef_set_arg_desc.ofer/ef_utility/ef_get_wrk_mem_subscripts_6d.ofer/ef_utility/ef_set_alt_fcn_name.o fer/ef_utility/ef_set_arg_name.ofer/ef_utility/ef_set_arg_unit.o fer/ef_utility/ef_set_custom_axis.ofer/ef_utility/ef_set_freq_axis.o fer/ef_utility/ef_set_desc.ofer/ef_utility/ef_set_real_to_string.o fer/special/fakes3.ofer/special/ferret_dispatch.o fer/special/ferret_query_f.ofer/special/gui_fakes.o fer/special/linux_routines.ofer/special/xmake_date_data.o fer/special/xrevision_type_data.ofer/special/xplatform_type_data.o -Llib-L/sw/dataformats/netcdf/4.3.0/smp1/gnu/lib-L/sw/dataformats/hdf5/1.8.12/smp1/gnu/lib-L/sw/tools/python/2.7.6/generic/lib-L/sw/tools/python/2.7.6/generic/lib -ltmapadds -lcmp -lour -lplt -lpll-lepi -lusr -lsym -ltmap -lccr -lcferbind -lctx -ldat -ldoo -lefi -lefn-lfmt -lgnl -lgrdel -lino -lmem -locn -lferplt -lpyf -lrpn -lstk -lutl-lxeq -ltmapadds -lcmp -lour -lplt -lpll -lepi -lusr -lsym -ltmap -lccr-lcferbind -lctx -ldat -ldoo -lefi -lefn -lfmt -lgnl -lgrdel -lino -lmem-locn -lferplt -lpyf -lrpn -lstk -lutl -lxeq -ltmapadds -lcmp -lour-lplt -lpll -lepi -lusr -lsym -ltmap -lccr -lcferbind -lctx -ldat -ldoo-lefi -lefn -lfmt -lgnl -lgrdel -lino -lmem -locn -lferplt -lpyf -lrpn-lstk -lutl -lxeq -ltmapadds -lcmp -lour -lplt -lpll -lepi -lusr -lsym-ltmap -lccr -lcferbind -lctx -ldat -ldoo -lefi -lefn -lfmt -lgnl-lgrdel -lino -lmem -locn -lferplt -lpyf -lrpn -lstk -lutl -lxeq-ltmapadds -lcmp -lour -lplt -lpll -lepi -lusr -lsym -ltmap -lccr-lcferbind -lctx -ldat -ldoo -lefi -lefn -lfmt -lgnl -lgrdel -lino -lmem-locn -lferplt -lpyf -lrpn -lstk -lutl -lxeq -lpython2.7 -lpython2.7 -obuild/lib.linux-x86_64-2.7/pyferret/libpyferret.so-Wl,/sw/dataformats/netcdf/4.3.0/smp1/gnu/lib/libnetcdff.a-Wl,/sw/dataformats/netcdf/4.3.0/smp1/gnu/lib/libnetcdf.a-Wl,/sw/dataformats/hdf5/1.8.12/smp1/gnu/lib/libhdf5_hl.a-Wl,/sw/dataformats/hdf5/1.8.12/smp1/gnu/lib/libhdf5.a -lpangocairo-1.0-lpango-1.0 -lgobject-2.0 -lcairo -lcurl -lz -lgfortran -ldl -lm -fPIC[0m/usr/lib64/gcc/x86_64-suse-linux/4.3/../../../../x86_64-suse-linux/bin/ld:cannot find -lcurl/usr/lib64/gcc/x86_64-suse-linux/4.3/../../../../x86_64-suse-linux/bin/ld:cannot find -lgfortran


The point is, that the wrong linker is called.

which ld, which gcc or which gfortran

gives the right answer. Here libgfortran is available, usr/bin/gcc hasonly the dynamic one libgfortran.


libcurl.so.4  is available in /usr/lib64

I searched the Makefile how to fix this, but I do not have any idea.

make clean
does not remove the .o-files.

Any help or suggestion is very welcome,
Martin Schmidt

Follow-Ups:
- Re: [ferret_users] Building pyferret for Suse Linux 11 failed
  - From: Karl Smith - NOAA Affiliate

References:
- [ferret_users] Default order of dimensions
  - From: Ge Peng - NOAA Affiliate

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